Publications

Contrastive learning of T cell receptor representations Yuta Nagano, Andrew G.T. Pyo, Martina Milighetti, James Henderson, John Shawe-Taylor, Benny Chain, Andreas Tiffeau-Mayer, arxiv.org (2024)

Data-driven Discovery of Biophysical T Cell Receptor Co-specificity Rules Andrew G.T. Pyo, Yuta Nagano, Martina Milighetti, James Henderson, Curtis G. Callan Jr., Benny Chain, Ned S. Wingreen, Andreas Tiffeau-Mayer, arxiv.org (2024)

Intra- and inter-chain contacts determine TCR specificity: applying protein co-evolution methods to TCRαβ pairing Martina Milighetti, Yuta Nagano, James Henderson, Uri Hershberg, Andreas Tiffeau-Mayer, Anne-Florence Bitbol, Benny Chain, biorxiv.org (2024)

Limits on Inferring T-cell Specificity from Partial Information James Henderson, Yuta Nagano, Martina Milighetti, Andreas Tiffeau-Mayer, PNAS (2024)

tidytcells: standardizer for TR/MH nomenclature Yuta Nagano, Benjamin Chain, Frontiers in Immunology (2023)